<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD with OASIS Tables with MathML3 v1.2d1 20130915//EN" "JATS-archive-oasis-article1.dtd"><!--Arbortext, Inc., 1988-2011, v.4002--><article article-type="research-article" xml:lang="en" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><front><journal-meta><journal-id journal-id-type="publisher-id">MMB</journal-id><journal-title-group><journal-title>Meat and Muscle Biology</journal-title></journal-title-group><issn pub-type="epub">2575-985X</issn><publisher><publisher-name>American Meat Science Association</publisher-name><publisher-loc/></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.22175/mmb.18426</article-id><article-id pub-id-type="publisher-id"/><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title>Fresh Pork Loin pH Influences Meat Quality and the Presence of Desmin Degradation Products</article-title><alt-title alt-title-type="right-running">Jess et al.&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;&#x02003;pH impacts pork quality and desmin integrity</alt-title><?Pub Caret 32?></title-group><contrib-group><contrib contrib-type="author"><name><surname>Jess</surname><given-names>Cydne&#x02019; E.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Johnson</surname><given-names>Logan G.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author"><name><surname>Prusa</surname><given-names>Kenneth J.</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lonergan</surname><given-names>Steven M.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Huff-Lonergan</surname><given-names>Elisabeth</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib><aff id="aff1"><label><sup>1</sup></label>Department of Animal Science, <institution>Iowa State University</institution>, Ames, Iowa, 50011, <country>USA</country></aff><aff id="aff2"><label><sup>2</sup></label>Department of Food Science and Human Nutrition, <institution>Iowa State University</institution>, Ames, Iowa, 50011, <country>USA</country></aff></contrib-group><author-notes><corresp id="cor1"><label>*</label>Corresponding author. Email: <email>elonerga@iastate.edu</email> (Elisabeth Huff-Lonergan)</corresp></author-notes><pub-date date-type="epub" publication-format="electronic"><day>00</day><month>00</month><year>0000</year></pub-date><volume>9</volume><issue>1</issue><fpage>1</fpage><lpage>13</lpage><history><date date-type="received"><day>13</day><month>11</month><year>2024</year></date><date date-type="accepted"><day>25</day><month>03</month><year>2025</year></date></history><permissions><copyright-statement>&#x000A9; 2025 Jess, Johnson, Prusa, Lonergan, Huff-Lonergan.</copyright-statement><copyright-year>2025</copyright-year><copyright-holder>&#x000A9; 2025 Jess, Johnson, Prusa, Lonergan, Huff-Lonergan.</copyright-holder><license license-type="open-access"><license-p>This is an open access article distributed under the CC BY license (<ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link>)</license-p></license></permissions><abstract><title>Abstract</title><p>This study aimed to test the hypothesis that pork loin pH at 1-day postmortem influences fresh pork quality and degradation of desmin. Fresh pork loins from a commercial facility were evaluated based on 1-day postmortem pH value and ultimately classified as high/normal (5.90&#x02013;6.46, <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula> &#x02009;=&#x02009;6.09; <italic>n</italic>&#x02009;=&#x02009;25) and low/normal (5.59&#x02013;5.71, <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula>&#x02009;=&#x02009;5.67; <italic>n</italic>&#x02009;=&#x02009;25). Instrumental color and drip loss were determined on 1-day postmortem chops (2.54&#x000A0;cm). The remaining chops were individually vacuum packaged, aged 1, 7, or 14 d postmortem at 4&#x000B0;C, and then frozen until further analyses. Intramuscular lipid and moisture content was determined through proximate analysis. Instrumental star probe tenderness was evaluated on cooked chops (68&#x000B0;C) from each aging time. Trained sensory panel evaluation and cooking loss were determined on cooked, 14-d postmortem chops. Western blot analysis examined the presence of desmin degradation products within low ionic strength extracts of <italic>longissimus thoracis</italic>. Based on the pH categories, star probe tenderness, drip loss, cook loss, palatability traits, meat color measurements, and the presence of desmin degradation products were significantly different, whereas intramuscular lipid content was not different. High/normal pH chops had lower L values at 1-d (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) and 14-d postmortem (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01). Drip loss was greater (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) in 1-d low/normal pH chops, as was cooking loss at each aging time (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01). The trained sensory panel rated high/normal pH loins as juicier (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), more tender (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), and less chewy (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.05). High/normal pH chops had lower star probe values compared to low/normal pH chops at 1 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), 7 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), and 14 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) d postmortem. High/normal pH chops exhibited a greater proportion of samples containing desmin degradation products within the low ionic strength extract at each aging time (<italic>P</italic>&#x000A0;&#x0003C;&#x000A0;0.01). Variation in 1-d postmortem pH contributes to differences in measurable quality characteristics of fresh pork loin and impacts the presence of desmin degradation products in low ionic strength extracts.</p></abstract><kwd-group><title>Key words:</title><kwd>desmin</kwd><kwd>fresh meat quality</kwd><kwd>pork loin</kwd><kwd>proteolysis</kwd><kwd>ultimate pH</kwd></kwd-group></article-meta></front><body><sec id="sec1"><title>Introduction</title><p>Consumers value the tenderness of fresh pork products (<xref ref-type="bibr" rid="r46">Norman et&#x000A0;al., 2003</xref>; <xref ref-type="bibr" rid="r45">Moeller et&#x000A0;al., 2010</xref>; <xref ref-type="bibr" rid="r44">Miller, 2020</xref>); however, measuring tenderness is intensive and costly at a large scale, resulting in inconsistencies in product quality within the retail case. Consumers cannot visually determine the eating experience of pork products; therefore, defining alternative means to classify and identify higher-quality pork products would be of value to consumers and pork producers. Such approaches have begun to focus on the connection between specific biomolecules, namely proteins and metabolites, to pork quality traits (<xref ref-type="bibr" rid="r55">Ramanathan et&#x000A0;al., 2023</xref>; <xref ref-type="bibr" rid="r20">Gagaoua et&#x000A0;al., 2024</xref>). The multifaceted nature of factors (<xref ref-type="bibr" rid="r56">Rosenvold and Anderson, 2003</xref>; <xref ref-type="bibr" rid="r59">Scheffler and Gerrard, 2007</xref>) influencing pork quality has posed a significant challenge in the search for a simple, convenient measurement.</p><p>The rate and extent of postmortem pH decline can considerably affect fresh pork color (<xref ref-type="bibr" rid="r6">Brewer et&#x000A0;al., 2001</xref>; <xref ref-type="bibr" rid="r19">Fern&#x000E1;ndez-L&#x000F3;pez et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r4">Boler et&#x000A0;al., 2010</xref>; <xref ref-type="bibr" rid="r54">Ramanathan et&#x000A0;al., 2020</xref>), water-holding capacity (<xref ref-type="bibr" rid="r2">Bendall and Wismer-Pedersen, 1962</xref>; <xref ref-type="bibr" rid="r26">Huff-Lonergan and Lonergan, 2005</xref>; <xref ref-type="bibr" rid="r13">Cheng and Sun, 2008</xref>) and tenderness (<xref ref-type="bibr" rid="r65">Watanabe et&#x000A0;al., 1996</xref>; <xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r1">Bee et&#x000A0;al., 2007</xref>; <xref ref-type="bibr" rid="r24">Huff-Lonergan et&#x000A0;al., 2010</xref>; <xref ref-type="bibr" rid="r33">Kim et&#x000A0;al., 2014</xref>; <xref ref-type="bibr" rid="r39">Lomiwes et&#x000A0;al., 2014</xref>; <xref ref-type="bibr" rid="r69">Zuber et&#x000A0;al., 2021</xref>). Directly measuring these meat quality attributes would help assign different levels of quality. However, meat quality measurements can be challenging to collect consistently, and the feasibility of measuring pH in a commercial setting, especially within a commercial setting across multiple locations. Thus, various proxy measurements, including pH, have been proposed as alternatives to directly measuring meat quality. Although the rate and extent of pH decline are important in the development of ultimate meat quality, the feasibility of capturing nuanced variations of pH in a commercial setting while maintaining calibration and accurate records remains challenging. Biological markers could more efficiently and consistently distinguish pork loin quality, as changes in specific, relevant biomolecules likely reflect the progression of meat quality development in ways other measurements do not. Specific biomolecules, including proteins, peptides, and metabolites, have been previously evaluated to establish relationships to phenotypic traits. The potential development of a rapid antigenic test to screen the presence or absence of a biological indicator, like a protein, could rapidly and accurately screen many samples simultaneously. A robust understanding and relationship of protein changes associated with phenotypic traits, like pork loin quality, are first needed.</p><p>Proteolysis of myofibrillar and cytoskeletal proteins, including desmin, by the endogenous protease calpain-1, has widely been considered a key mechanism responsible for disruption to myofibrillar organization that results in tenderness (<xref ref-type="bibr" rid="r62">Taylor et&#x000A0;al., 1995</xref>; <xref ref-type="bibr" rid="r21">Geesink et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r3">Bhat et&#x000A0;al., 2018</xref>). The degradation of desmin is highly related to pork tenderness (<xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>; <xref ref-type="bibr" rid="r61">Schulte et&#x000A0;al., 2020</xref>) and water-holding capacity (<xref ref-type="bibr" rid="r68">Zhang et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r1">Bee et&#x000A0;al., 2007</xref>; <xref ref-type="bibr" rid="r67">Zeng et&#x000A0;al., 2017</xref>). <xref ref-type="bibr" rid="r69">Zuber et&#x000A0;al. (2021)</xref> found that pork loins classified as normal pH (5.53&#x02013;5.67) exhibited more desmin degradation and also had significantly lower star probe values than pork loins classified as low pH (5.38&#x02013;5.45). Intriguingly, desmin degradation products have been detected in the low ionic strength soluble protein fraction of pork chops of different quality measures (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>; <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>; <xref ref-type="bibr" rid="r31">Johnson et&#x000A0;al., 2024</xref>). Given that desmin is known to be degraded in early postmortem environments (<xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>), desmin degradation products may serve as a reliable protein marker within the soluble protein fraction of meat.</p><p>Therefore, the first objective of this study was to define how early postmortem pH categories affect the aged pork loin phenotype. Subsequently, this work sought to evaluate desmin degradation products and their potential to be used as markers of pork loin quality. It was hypothesized that a greater 1-day postmortem pH would result in more desirable quality attributes of fresh and aged pork loin and a greater abundance of degraded desmin within the low ionic strength soluble protein fraction.</p></sec><sec id="sec2"><title>Materials and Methods</title><p>No live animals were used in the current study; therefore, approval from the Institutional Animal Care and Use Committee was not needed. The sensory analysis protocol was approved by the Iowa State University Institutional Review Board (IRB ID: 21-046-00).</p><sec id="sec2.1"><title>Collection of pork loin quality data</title><p>Fresh pork loins were evaluated from the fabrication line of a commercial processing facility the day after harvest over the course of an hour. The predetermined selection criteria for inclusion in this study included loins with a 1-day pH value (Hanna HI905, Hanna Instruments, Woonsocket, RI, USA) less than 5.7 (low/normal pH, <italic>n</italic>&#x02009;=&#x02009;25; 5.59&#x02013;5.71; <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula>&#x02009;=&#x02009;5.67) or greater than 5.9 (high/normal pH, <italic>n</italic>&#x02009;=&#x02009;25; 5.90&#x02013;6.49; <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula>&#x02009;=&#x02009;6.09) to represent variation in early postmortem pH. Selected loins were vacuum packaged and transported on ice to the Iowa State University Meat Laboratory (Ames, IA, USA) on the same day. Each loin was fabricated into chops containing only the <italic>longissimus thoracis</italic> (LT) muscle on the same day as collection from the plant (see <xref ref-type="fig" rid="f1">Figure&#x000A0;1</xref> for loin fabrication layout). Chops from each loin were then trimmed of external fat and connective tissue. Chops that were not used immediately were vacuum packaged, stored at 4&#x000B0;C, and frozen at the end of their respective aging times. During fabrication, the pH of a 1-day chop (2.54&#x000A0;cm) from each loin was measured using a pH meter (Hanna HI905, Hanna Instruments, Woonsocket, RI, USA). The pH meter was calibrated using commercial pH 4 and 7 buffers. Calibration was maintained by checking accuracy between each chop using pH 7 buffer within a range of (6.95&#x02013;7.05). Color was measured following a 20-min bloom period after removing chops from vacuum packaging. Hunter <italic>L</italic>, <italic>a</italic>, and <italic>b</italic> values were measured at the center of the surface of 1 and 14-day aged chops using a Konica Minolta Chroma Meter (Konica Minolta, Ramsey, NJ, USA) with a D65 light source, 50-mm aperture, and 2&#x000B0; observer angle (<xref ref-type="bibr" rid="r34">King et&#x000A0;al., 2022</xref>). Hue angles of 1- and 14-d aged chops were calculated as (arctangent [<italic>b</italic>/<italic>a</italic>]) (<xref ref-type="bibr" rid="r34">King et&#x000A0;al., 2022</xref>).</p><fig id="f1"><label>Figure 1.</label><caption><p>Fresh pork loin fabrication and sample analysis designation.</p></caption><graphic xlink:href="1.png"/></fig></sec><sec id="sec2.2"><title>Drip loss</title><p>Two fresh 1-d chops (2.54&#x000A0;cm) from each loin were used to determine drip loss on the same day as loin collection and fabrication. Excess moisture on the chop surface was blotted off before weighing. Chops were then weighed, placed in sealed individual plastic bags, and stored at 4&#x000B0;C for approximately 24&#x000A0;h. Chops were then removed from the bags and reweighed to calculate drip loss using the equation: ([Initial wt. (g)&#x02212;Final wt. (g)]/[Initial wt. (g)]&#x02009;&#x000D7;&#x02009;100) (<xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>). The average drip loss of the chops from each loin was used in the analysis.</p></sec><sec id="sec2.3"><title>Instrumental tenderness analysis</title><p>Two cooked chops (2.54&#x000A0;cm) from each aging period were used for instrumental tenderness measurement. Before cooking, chops were thawed at 4&#x000B0;C (approximately 24&#x000A0;h) in the vacuum bag. Chops were cooked to an internal temperature of 68&#x000B0;C using Ninja Foodi grills (AG302, SharkNinja, Needham, MA, USA). Cooking loss was calculated using the equation: ([raw wt. (g)&#x02212;cooked wt. (g)]/[raw wt. (g)]&#x02009;&#x000D7;&#x02009;100) (<xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>). Chops were cooled at room temperature (approximately 22&#x000B0;C) for 20&#x000A0;min prior to instrumental tenderness measurement. An Instron (Model# 5566, Norwood, MA, USA) was equipped with a 5-point star probe attachment to measure the force (kg) required to puncture, shear, and compress a cooked chop to 20% of its original height (<xref ref-type="bibr" rid="r25">Huff-Lonergan et&#x000A0;al., 2002</xref>). Three replicate compressions were made on each chop and averaged to determine a final star probe value (<xref ref-type="bibr" rid="r60">Schulte et&#x000A0;al., 2019</xref>).</p></sec><sec id="sec2.4"><title>Collection of sensory data</title><p>Two 14-d aged chops (2.54&#x000A0;cm) from each loin were used for sensory analysis. Before cooking, chops were thawed at 4&#x000B0;C (approximately 24&#x000A0;h). Chops were cooked to an internal temperature of 68&#x000B0;C as described for instrumental tenderness. Following cooking, 1 chop was cut into 1.5-cm cubes and immediately served to panelists for evaluation. A trained sensory panel (<italic>n</italic>&#x02009;=&#x02009;3, Iowa State IRB ID: 21-046-00), all with at least 3&#x000A0;y of training and continuous evaluation experience, evaluated tenderness, juiciness, chewiness, pork flavor, and off-flavor on a 10-point categorical scale (<xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>). Lower scores indicated a lesser degree of a given characteristic, whereas higher scores indicated a greater degree of a given characteristic in a sample. For tenderness, (1&#x02009;=&#x02009;tough; 10&#x02009;=&#x02009;tender). For juiciness, (1&#x02009;=&#x02009;dry; 10&#x02009;=&#x02009;very juicy). For chewiness, (1&#x02009;=&#x02009;minimal chewiness; 10&#x02009;=&#x02009;high chewiness). For pork flavor, (1&#x02009;=&#x02009;low pork flavor; 10&#x02009;=&#x02009;high pork flavor). For off-flavor, (1&#x02009;=&#x02009;no detectable off-flavors; 10&#x02009;=&#x02009;high presence of off-flavors).</p></sec><sec id="sec2.5"><title>Proximate analysis</title><p>Pork loin chops (0.64&#x000A0;cm) containing only the LT muscle from each loin were individually frozen in liquid nitrogen and pulverized for use in proximate analysis. Moisture content was determined using the CEM SMART 6 system (Official Method 2008.06, <xref ref-type="bibr" rid="r70">AOAC International, 2019</xref>), and fat content was determined using the CEM ORACLE system (Official Method 2008.06, <xref ref-type="bibr" rid="r70">AOAC International, 2019</xref>) (CEM Corporation, Matthews, NC, USA). All analyses were conducted in triplicate and averaged.</p></sec><sec id="sec2.6"><title>Protein extraction and sample preparation</title><p>Extraction of proteins soluble in low ionic strength buffer was done as described by <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al. (2023a)</xref>. Briefly, frozen pork loin chops (0.64&#x000A0;cm) containing only the LT muscle (&#x0223C;200 g) from each loin and aging period were separately diced, homogenized, uniformly powdered in liquid nitrogen, and stored at &#x02212;80&#x000B0;C. Powdered muscle samples (&#x0223C;1.5 g) were mixed with 4.5&#x000A0;mL of ice-cold low ionic strength extraction buffer (50 mM Tris-HCl [pH 8.5] and 1 mM ethylenediamine-tetraacetic acid [EDTA]), homogenized using a Polytron PT 3100 (Polytron, Lucerne, Switzerland), clarified by centrifugation, and subsequently filtered through cheesecloth. The protein concentration of the supernatant was determined using a Bradford Colorimetric Assay Kit (#5000002, Bio-Rad Laboratories, Hercules, CA, USA), and samples were adjusted to a final protein concentration of 4&#x000A0;mg/mL using ice-cold low ionic strength extraction buffer, 0.5 vol Wang&#x02019;s tracking dye (3 mM EDTA, 3% [wt/vol] sodium dodecyl sulfate [SDS], 30% [vol/vol] glycerol, 0.001% pyronin Y, 30 mM Tris-HCl [pH 8.0]), and 0.1 vol of 2- mercaptoethanol. Samples were heated at 50&#x000B0;C for 15&#x000A0;min in a dry heating block, vortexed, and stored at &#x02212;80&#x000B0;C until use. Consistency of sample protein concentrations was confirmed by loading 40 &#x003BC;g of each sample in a random order onto 10 by 10&#x000A0;cm 15% polyacrylamide separating gels overlayed with a 5% stacking gel containing 10 lanes as previously described (<xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>). Following electrophoresis, gels were stained overnight (approximately 15&#x02013;20&#x000A0;h) with Colloidal Coomassie Blue stain according to Merril (<xref ref-type="bibr" rid="r43">1990</xref>) with slight modifications (<xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>). Gels were destained with distilled, deionized water, and changed 3 times in 30-min increments. Protein samples were visually assessed to confirm similar protein loading equivalents.</p></sec><sec id="sec2.7"><title>SDS-polyacrylamide gel electrophoresis and running conditions</title><p>One-dimensional SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and western blotting were used to determine the abundance of desmin degradation products within the low ionic strength extract of postmortem muscle at each aging time. Gel systems and running conditions were utilized as described by <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al. (2023a)</xref>. 15% polyacrylamide gels overlayed with a 5% stacking gel containing 10 lanes were loaded with 50 &#x003BC;g of protein from the prepared 4&#x000A0;mg/mL gel samples. The first lane contained Precision Plus Protein All-Blue Pre-Stained Protein Standards (Bio-Rad Laboratories, Hercules, CA, USA). A 14-d postmortem reference sample of low ionic strength soluble protein was prepared, and 20 &#x003BC;g protein was loaded into the fifth lane of every gel. Proteins were separated using SE 260 Hoefer Mighty Small II Vertical Electrophoresis units (Hoefer, Inc.) at a constant 120&#x000A0;V for approximately 360&#x000A0;V/h. The running buffer consisted of 25 mM Tris, 192 mM Glycine, 2 mM EDTA, and 0.1% (wt/vol.) SDS.</p></sec><sec id="sec2.8"><title>Transferring conditions and western blot analysis</title><p>Western blot analysis was performed as described by <xref ref-type="bibr" rid="r60">Schulte et&#x000A0;al. (2019)</xref>. Following electrophoresis, proteins were transferred to polyvinylidene difluoride membranes (0.2 &#x003BC;m, Millipore Corporation, Billerica, MA, USA) using TE-22 Mighty Small Transphor Units (Hoefer, Inc.) at a constant rate of 90&#x000A0;V for 90&#x000A0;min at 4&#x000B0;C. Membranes were blocked for 45&#x000A0;min at room temperature in a PBS-Tween solution [80 mM Na<sub>2</sub>HPO<sub>4</sub>, anhydrous, 20 mM NaH<sub>2</sub>PO<sub>4</sub>, 100 mM NaCl, 0.1% [vol/vol] polyoxyethylene sorbitan monolaurate (Tween-20)] containing 5% [wt/vol] non-fat dry milk. After blocking, polyclonal rabbit anti-desmin (Iowa State University, <xref ref-type="bibr" rid="r27">Huff-Lonergan et&#x000A0;al., 1996a</xref>) was diluted 1:40,000 in PBS-Tween and incubated with membranes overnight (approximately 15&#x02013;20&#x000A0;h) at 4&#x000B0;C. Membranes were subsequently washed 3 times for 10-min intervals using PBS-Tween and incubated for 1&#x000A0;h at room temperature with goat anti-rabbit-horseradish peroxidase-conjugated (31460, Thermo Scientific, Rockford, IL, USA) secondary antibody diluted 1:20,000 in PBS-Tween. After incubation, membranes were washed 3 times for 10-min intervals using PBS-Tween. Desmin was detected using a chemiluminescent detection kit (ECL Prime, GE Healthcare, Piscataway, NJ, USA) and captured and analyzed using a ChemiImager 5500 (Alpha Innotech, San Leandro, CA, USA) and Alpha Ease FC Software (v 3.03 Alpha Innotech). Analysis of desmin degradation was performed as described by <xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>. Separately, the densitometry of the 2 desmin degradation products (&#x0223C;38-kDa, &#x0223C;37-kDa) was compared with the corresponding degradation bands of the internal reference used on all blots and quantified as a comparative ratio (<xref ref-type="fig" rid="f2">Figure&#x000A0;2</xref>). All samples were completed at least in duplicate with a desired coefficient of variation of less than 20%. The desmin western blot data were subsequently classified as a binary variable based on the presence of detectable desmin degradation products.</p><fig id="f2"><label>Figure 2.</label><caption><p>Representative western blot of desmin degradation products in low ionic strength soluble extracts from pork loins classified as low/normal or high/normal based on 1-d postmortem pH.</p></caption><graphic xlink:href="2.png"/></fig></sec><sec id="sec2.9"><title>Statistical analysis</title><p>All data were analyzed using R Statistical Software (v 4.2.1, <xref ref-type="bibr" rid="r52">R Core Team, 2023</xref>). All data were analyzed separately by aging time, as aging time was confounded with chop location within a loin. A comparative group design was employed, where an individual loin (<italic>n</italic>&#x02009;=&#x02009;50) was considered the experimental unit. A one-way analysis of variance was performed with a fixed effect of pH category for quality measurement data using the <italic>car</italic> (v. 3.1-2) package. The analysis of sensory data included a fixed effect of pH category and a random effect of the panelist in the model. Estimated marginal means were obtained for all data using the <italic>emmeans</italic> (v. 1.8.9) package. Comparisons of means were performed using Tukey&#x02019;s test with a Kenward-Roger degrees of freedom adjustment. The binary desmin degradation product variable was analyzed using a chi-squared test of independence with continuity correction using the prop.test function in the <italic>stats</italic> package (<xref ref-type="bibr" rid="r52">R Core Team, 2023</xref>). The significance level was determined at <italic>P</italic>&#x02009;&#x0003C;&#x02009;0.05.</p></sec></sec><sec id="sec3"><title>Results</title><sec id="sec3.1"><title>Fresh pork loin quality</title><p>Fresh pork loins were categorized as high (5.90&#x02013;6.46; <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula>&#x02009;=&#x02009;6.09) and low (5.59&#x02013;5.71; <inline-formula><mml:math display="inline"><mml:mrow><mml:mover><mml:mrow><mml:mi mathvariant="normal">x</mml:mi></mml:mrow><mml:mrow><mml:mo stretchy="false">&#x000AF;</mml:mo></mml:mrow></mml:mover></mml:mrow></mml:math></inline-formula>&#x02009;=&#x02009;5.67) based on 1-d postmortem pH values. All loins were evaluated and screened for quality defects, and no loins in either pH category exhibited attributes associated with dark, firm, and dry or pale, soft, and exudative quality defects. Thus, the pH categories were termed &#x0201C;high/normal&#x0201D; and &#x0201C;low/normal&#x0201D; to reflect the absence of these quality defects. Fresh pork loin quality attributes of both pH categories are summarized in <xref ref-type="table" rid="tab1">Table&#x000A0;1</xref>.</p><table-wrap id="tab1"><label>Table 1.</label><caption><p>Summary of fresh pork loin chop quality traits from pork loins classified as high/normal or low/normal based on 1-d postmortem pH and analyzed separately by aging time</p></caption><table frame="hsides" rules="groups"><colgroup><col align="left" width="16*"/><col align="center" width="16*"/><col align="char" width="16*" char="."/><col align="char" width="16*" char="."/><col align="char" width="16*" char="."/><col align="char" width="16*" char="."/></colgroup><thead><tr><th/><th/><th>High/Normal pH Category<sup>1</sup></th><th>Low/Normal pH Category<sup>1</sup></th><th>SEM</th><th><italic>P</italic> Value</th></tr></thead><tbody><tr><td/><td>Moisture (%)<sup>2</sup></td><td>74.1<sup>a</sup></td><td>73.5<sup>b</sup></td><td>0.18</td><td>0.028</td></tr><tr><td/><td>Lipid (%)<sup>3</sup></td><td>2.8</td><td>3.0</td><td>0.20</td><td>0.36</td></tr><tr><td colspan="6"><bold>Day 1</bold></td></tr><tr><td/><td>Hunter <italic>L</italic></td><td>44.3<sup>b</sup></td><td>49.5<sup>a</sup></td><td>0.55</td><td>&#x0003C;0.01</td></tr><tr><td/><td>Hunter <italic>a</italic></td><td>12.6<sup>b</sup></td><td>13.2<sup>a</sup></td><td>0.16</td><td>0.014</td></tr><tr><td/><td>Hunter <italic>b</italic></td><td>3.4<sup>b</sup></td><td>4.4<sup>a</sup></td><td>0.15</td><td>&#x0003C;0.01</td></tr><tr><td/><td>Hue angle</td><td>15.1<sup>b</sup></td><td>18.6<sup>a</sup></td><td>0.48</td><td>&#x0003C;0.01</td></tr><tr><td colspan="6"><bold>Day 14</bold></td></tr><tr><td/><td>Hunter <italic>L</italic></td><td>49.5<sup>b</sup></td><td>53.2<sup>a</sup></td><td>0.55</td><td>&#x0003C;0.01</td></tr><tr><td/><td>Hunter <italic>a</italic></td><td>13.7<sup>a</sup></td><td>13.1<sup>b</sup></td><td>0.16</td><td>&#x0003C;0.01</td></tr><tr><td/><td>Hunter <italic>b</italic></td><td>4.7</td><td>5.1</td><td>0.17</td><td>0.13</td></tr><tr><td/><td>Hue angle</td><td>18.9<sup>b</sup></td><td>21.3<sup>a</sup></td><td>0.61</td><td>&#x0003C;0.01</td></tr></tbody></table><table-wrap-foot><fn><label><sup>a,b</sup></label><p>Means with different superscripts within rows indicate a significant difference between means within pH category (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.05).</p></fn><fn><label><sup>1</sup></label><p>High/Normal pH range: (5.90&#x02013;6.46), low/Normal pH range: (5.59&#x02013;5.71).</p></fn><fn><label><sup>2</sup></label><p>Determined using the CEM SMART 6 system (Official Method 2008.06, AOAC International).</p></fn><fn><label><sup>3</sup></label><p>Determined using the CEM ORACLE system (Official Method 2008.06, AOAC International). Hunter <italic>L</italic>, <italic>a</italic>, and <italic>b</italic> determined with Minolta Chroma Meter with D65 light source, 50-mm aperture, and 2&#x000B0;observer.</p></fn><fn><p>Hue angle&#x02009;=&#x02009;[arctangent (<italic>b</italic>/<italic>a</italic>)].</p></fn><fn><p>SEM&#x02009;=&#x02009;standard error of the mean.</p></fn></table-wrap-foot></table-wrap><p>Hunter <italic>L</italic> value was lower in high/normal pH chops at day 1 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) as well as day 14 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01). Low/normal chops exhibited a higher (<italic>P</italic>&#x02009;=&#x02009;0.014) Hunter <italic>a</italic> value on day 1 (13.2 vs. 12.6); however, after 14 d of aging, high/normal pH chops exhibited a higher (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) <italic>a</italic> value compared with low/normal pH chops (13.7 vs. 13.1). Hunter <italic>b</italic> value was higher in low/Normal pH chops at day 1 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), but was not significantly different (<italic>P</italic>&#x02009;=&#x02009;0.13) between the 2 pH categories at day 14. The hue angle was higher in low/normal pH chops on day 1 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) and day 14 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01).</p><p>Intramuscular lipid content was not different (<italic>P</italic>&#x02009;=&#x02009;0.36) between pH categories. Intramuscular moisture content was greater (<italic>P</italic>&#x02009;=&#x02009;0.028) in high/normal pH chops compared with low/normal pH chops (74.1% vs. 73.5%; <xref ref-type="table" rid="tab1">Table&#x000A0;1</xref>). Drip loss was greater (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) in low/normal pH chops compared with high/normal pH chops on day 1 (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>). Cooking loss was less (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) in high/normal pH chops compared to low/normal pH chops at each aging time (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>).</p><table-wrap id="tab2"><label>Table 2.</label><caption><p>Pork loin chop drip loss, instrumental star probe, and cook loss measurements from pork loins classified as high/normal or low/normal based on 1-d postmortem pH and analyzed separately by aging time</p></caption><table frame="hsides" rules="groups"><colgroup><col align="left"/><col align="center"/><col align="char" char="."/><col align="char" char="."/><col align="char" char="."/><col align="char" char="."/></colgroup><thead><tr><th/><th/><th>High/Normal pH Category<sup>1</sup></th><th>Low/Normal pH Category<sup>1</sup></th><th>SEM</th><th><italic>P</italic> Value</th></tr></thead><tbody><tr><td colspan="6"><bold>Day 1</bold></td></tr><tr><td/><td>Drip Loss (%)<sup>2</sup></td><td>0.53<sup>b</sup></td><td>2.46<sup>a</sup></td><td>0.14</td><td>&#x0003C;0.0001</td></tr><tr><td/><td>Star Probe (kg)<sup>3</sup></td><td>5.11<sup>b</sup></td><td>5.88<sup>a</sup></td><td>0.19</td><td>&#x0003C;0.01</td></tr><tr><td/><td>Cook Loss (%)<sup>4</sup></td><td>17.3<sup>b</sup></td><td>21.1<sup>a</sup></td><td>0.53</td><td>&#x0003C;0.01</td></tr><tr><td colspan="6"><bold>Day 7</bold></td></tr><tr><td/><td>Star Probe (kg)<sup>3</sup></td><td>4.90<sup>b</sup></td><td>6.14<sup>a</sup></td><td>0.19</td><td>&#x0003C;0.0001</td></tr><tr><td/><td>Cook Loss (%)<sup>4</sup></td><td>17.0<sup>b</sup></td><td>21.8<sup>a</sup></td><td>0.51</td><td>&#x0003C;0.01</td></tr><tr><td colspan="6"><bold>Day 14</bold></td></tr><tr><td/><td>Star Probe (kg)<sup>3</sup></td><td>4.07<sup>b</sup></td><td>5.18<sup>a</sup></td><td>0.16</td><td>&#x0003C;0.0001</td></tr><tr><td/><td>Cook Loss (%)<sup>4</sup></td><td>17.0<sup>b</sup></td><td>21.0<sup>a</sup></td><td>0.64</td><td>&#x0003C;0.01</td></tr></tbody></table><table-wrap-foot><fn><label><sup>a,b</sup></label><p>Means with different superscripts within rows indicate a significant difference between means within pH category (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.05).</p></fn><fn><label><sup>1</sup></label><p>High/normal pH range: (5.90&#x02013;6.46), low/normal pH range: (5.59&#x02013;5.71).</p></fn><fn><label><sup>2</sup></label><p>Drip loss %&#x02009;=&#x02009;[(initial weight [start]&#x02009;&#x02212;&#x02009;final weight [end])/initial weight]&#x02009;&#x000D7;&#x02009;100.</p></fn><fn><label><sup>3</sup></label><p>An Instron fitted with a 5-point star probe attachment was used to assess the force needed to compress a chop to 20% of its original height (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>).</p></fn><fn><label><sup>4</sup></label><p>Chops were cooked to an internal temperature of 68&#x000B0;C on Ninja Foodi Grills. Cook loss %&#x02009;=&#x02009;[(raw weight&#x02009;&#x02212;&#x02009;cooked weight)/raw weight]&#x02009;&#x000D7;&#x02009;100.</p></fn><fn><p>SEM&#x02009;=&#x02009;standard error of the mean.</p></fn></table-wrap-foot></table-wrap></sec><sec id="sec3.2"><title>Instrumental tenderness and trained sensory panel analysis</title><p>Results from sensory panel analysis of 14-d aged chops from each pH category are summarized in <xref ref-type="table" rid="tab3">Table&#x000A0;3</xref>. Chops from the high/Normal category demonstrated lower star probe values compared to low/normal chops on day 1 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), day 7 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), and day 14 (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>). Sensory analysis results show that chops from the high/normal pH category had greater scores for juiciness (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) and tenderness (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), lower chewiness scores (<italic>P</italic>&#x02009;=&#x02009;0.012), greater pork flavor (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01), and less off-flavor <italic>(P</italic>&#x02009;&#x0003C;&#x02009;0.01).</p><table-wrap id="tab3"><label>Table 3.</label><caption><p>Trained sensory panel scores of cooked 14-d aged pork loin chops from loins classified as high/normal or low/normal based on 1-d postmortem pH</p></caption><table frame="hsides" rules="groups"><colgroup><col align="left"/><col align="char" char="."/><col align="char" char="."/><col align="char" char="."/><col align="char" char="."/></colgroup><thead><tr><th/><th>High/Normal pH Category<sup>1</sup></th><th>Low/Normal pH Category<sup>1</sup></th><th>SEM</th><th><italic>P</italic> Value</th></tr></thead><tbody><tr><td><bold>Juiciness</bold></td><td>7<sup>a</sup></td><td>6<sup>b</sup></td><td>0.2</td><td>&#x0003C;0.001</td></tr><tr><td><bold>Tenderness</bold></td><td>8<sup>a</sup></td><td>6<sup>b</sup></td><td>0.2</td><td>&#x0003C;0.0001</td></tr><tr><td><bold>Chewiness</bold></td><td>4<sup>b</sup></td><td>5<sup>a</sup></td><td>0.2</td><td>0.012</td></tr><tr><td><bold>Pork Flavor</bold></td><td>6<sup>a</sup></td><td>5<sup>b</sup></td><td>0.5</td><td>&#x0003C;0.0001</td></tr><tr><td><bold>Off-Flavor</bold></td><td>1<sup>b</sup></td><td>2<sup>a</sup></td><td>0.3</td><td>&#x0003C;0.0001</td></tr></tbody></table><table-wrap-foot><fn><label><sup>a,b</sup></label><p>Means with different superscripts within rows indicate a significant difference between means within pH category (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.05).</p></fn><fn><label><sup>1</sup></label><p>High/normal pH range: (5.90&#x02013;6.46), low/normal pH range: (5.59&#x02013;5.71).</p></fn><fn><label><sup>2</sup></label><p>Attributes were evaluated by a trained sensory panel (<italic>N</italic>&#x02009;=&#x02009;3) using a 10-point scale, whereby lower scores indicate a lower degree of a characteristic, and higher scores indicate a higher degree of a characteristic.</p></fn><fn><p>SEM&#x02009;=&#x02009;standard error of the mean.</p></fn></table-wrap-foot></table-wrap></sec><sec id="sec3.3"><title>Western blot analysis of desmin degradation</title><p>One-dimensional SDS-PAGE and western blot analyses confirmed that soluble desmin degradation products were present within the low ionic strength soluble protein fraction of postmortem muscle (<xref ref-type="fig" rid="f2">Figure&#x000A0;2</xref>) and that the presence or absence of detectable degradation products was significantly different between high/normal and low/normal pH categories (<xref ref-type="table" rid="tab4">Table&#x000A0;4</xref>). The low/normal pH category had detectable desmin degradation products in 3, 0, and 10 samples of the 25 samples on days 1, 7, and 14 postmortem, respectively. The high/normal pH category had detectable desmin degradation products in 15 samples on days 1 and 7 and 22 samples on day 14 postmortem. At each aging time, there was a difference (<italic>P</italic>&#x02009;&#x0003C;&#x02009;0.01) in the proportion of samples containing soluble desmin degradation products between the 2 pH categories. The proportion of samples containing desmin degradation products at day 1 was 60% in the high/normal versus 12% in the low/normal (95% CI 21&#x02013;75%). The proportion of samples containing desmin degradation products at day 7 was 60% in the high/normal versus 12% in the low/normal (95% CI 37&#x02013;83%). At day 14, the proportion of samples with detectable desmin degradation products was 88% in the high/normal versus 40% in the low/normal category (95% CI 21&#x02013;75%).</p><table-wrap id="tab4"><label>Table 4.</label><caption><p>The proportion of samples with detectable desmin degradation products in the low ionic strength soluble extracts from pork loins classified as high/normal or low/normal based on 1-d postmortem pH</p></caption><table frame="hsides" rules="groups"><colgroup><col align="left"/><col align="center"/><col align="center"/><col align="center"/><col align="char" char="."/></colgroup><thead><tr><th>Soluble Desmin</th><th align="center">High/Normal pH Category<sup>1</sup></th><th align="center">Low/Normal pH Category<sup>1</sup></th><th align="center">95% CI of Difference</th><th align="center"><italic>P</italic> Value</th></tr></thead><tbody><tr><td>Day 1 Present</td><td>15 (60%)</td><td>3 (12%)</td><td rowspan="2">[21%&#x02013;75%]</td><td rowspan="2">&#x0003C;0.0001</td></tr><tr><td><bold>Total</bold></td><td>25</td><td>25</td></tr><tr><td>Day 7 Present</td><td>15 (60%)</td><td>0 (0%)</td><td rowspan="2">[37%&#x02013;83%]</td><td rowspan="2">&#x0003C;0.0001</td></tr><tr><td><bold>Total</bold></td><td>25</td><td>25</td></tr><tr><td>Day 14 Present</td><td>22 (88%)</td><td>10 (44%)</td><td rowspan="2">[21%&#x02013;75%]</td><td rowspan="2">&#x0003C;0.01</td></tr><tr><td><bold>Total</bold></td><td>25</td><td>25</td></tr></tbody></table><table-wrap-foot><fn><label><sup>1</sup></label><p>High/normal pH range: (5.90&#x02013;6.46), low/normal pH range: (5.59&#x02013;5.71).</p></fn></table-wrap-foot></table-wrap></sec></sec><sec id="sec4"><title>Discussion</title><p>Variation in the quality of fresh pork products is a pertinent challenge to the U.S. pork industry. Identification of markers within the low ionic strength soluble protein fraction of meat indicative of pork quality attributes, such as water-holding capacity (<xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>) and tenderness (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>; <xref ref-type="bibr" rid="r61">Schulte et&#x000A0;al., 2020</xref>), could eventually be used to predict final product quality. Proposed protein markers found within this protein fraction could then potentially be detected through rapid, nondestructive analyses that utilize the exudate of fresh meat. Such methods would not only preserve the integrity of the product but also introduce the possibility of sorting products according to expected quality for marketing purposes, producing financial incentives for producers and a consistent product for consumers.</p><p>Toward that aim, this study generated 2 distinct categories of fresh pork loins that were divergent in 1-d postmortem pH, which were used to evaluate meat quality, sensory attributes, and desmin degradation profiles in the low ionic strength soluble protein fraction. It was hypothesized that variation in 1-d pH would significantly impact quality and sensory attributes and desmin degradation and that these differences would persist across 14 d of postmortem aging. These results demonstrate that the pork loin phenotype is affected by differences in early postmortem pH. The difference in the presence of desmin degradation products was apparent at 1-d postmortem, illustrating that these protein fragments could be reliable indicators of higher-quality pork loins.</p><sec id="sec4.1"><title>Instrumental color</title><p>Meat color is often indicative of quality and is a crucial component of consumers&#x02019; decisions to purchase fresh meat products (<xref ref-type="bibr" rid="r5">Brewer and McKeith, 1999</xref>; <xref ref-type="bibr" rid="r53">Ramanathan et&#x000A0;al., 2021</xref>). In the current study, high/normal pH chops exhibited lower Hunter <italic>L</italic> and <italic>b</italic> values and a lower hue angle at 1 and 14 d postmortem compared to low/normal pH chops. Lower hue angle values in high/normal pH chops at days 1 and 14 of aging may suggest less discoloration than in low/normal pH chops. The results of the current study are in agreement with prior studies that found instrumental color differences in pork exhibiting differences in 24-h postmortem pH. Pork with a higher pH (5.70&#x02013;6.10; <xref ref-type="bibr" rid="r32">Kim et&#x000A0;al., 2016</xref>) or high/normal pH (5.75&#x02013;6.04; <xref ref-type="bibr" rid="r4">Boler et&#x000A0;al., 2010</xref>) was darker in color, as evidenced by lower CIE and Minolta <italic>L*</italic> values. Similarly, pork classified as normal pH (5.53&#x02013;5.67) at 14 d postmortem had lower Hunter <italic>L</italic> and Hunter <italic>b</italic> values compared with low pH chops (<xref ref-type="bibr" rid="r69">Zuber et&#x000A0;al., 2021</xref>). <xref ref-type="bibr" rid="r32">Kim et&#x000A0;al. (2016)</xref> reported that pork with a pH below 5.70 at 24&#x000A0;h postmortem had higher CIE <italic>a*</italic> and <italic>b*</italic> values compared with pork with a pH between 5.7 and 6.1 and above 6.1. The results of the current study support the general observations that show that a higher ultimate pH is often associated with darker pork.</p></sec><sec id="sec4.2"><title>Drip loss and cook loss</title><p>High/Normal pH chops in the current study possessed less drip loss than low/Normal pH chops at 1-day postmortem (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>). Cooking loss was greater in low/Normal pH chops than in high/Normal pH chops (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>) on each day of postmortem aging. These observations are consistent with results from <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al. (2023a)</xref>, who found that pork chops with an average 24&#x000A0;h pH of 5.77 had less purge loss (0.33% vs. 1.19%), exhibited a darker color, lower star probe values, and greater sensory tenderness scores than chops with an average 24&#x000A0;h pH of 5.63. <xref ref-type="bibr" rid="r32">Kim et&#x000A0;al. (2016)</xref> reported that pork with a 24&#x000A0;h pH below 5.7 had more drip loss than pork with a higher 24&#x000A0;h pH from 5.7 to 6.1. Previous studies have reported more cooking loss in lower-pH pork (<xref ref-type="bibr" rid="r17">Dall Aaslyng et&#x000A0;al., 2003</xref>) and that cooking loss decreased as pH increased (<xref ref-type="bibr" rid="r4">Boler et&#x000A0;al., 2010</xref>). Higher cooking loss of low/normal pH chops in the present study could be attributed to a lower ultimate pH caused by a greater extent of postmortem pH decline and a lesser degree of proteolysis.</p><p>Drip loss, while considerably associated with the rate and extent of pH decline, has also been strongly linked to proteolysis of myofibrillar proteins and drip channel formation (<xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r26">Huff-Lonergan and Lonergan, 2005</xref>; <xref ref-type="bibr" rid="r68">Zhang et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r1">Bee et&#x000A0;al., 2007</xref>; <xref ref-type="bibr" rid="r51">Qian et&#x000A0;al., 2020</xref>). Specifically, it has been found that the degradation of cytoskeletal proteins such as integrin and desmin can influence the formation of drip channels in fresh pork (<xref ref-type="bibr" rid="r37">Lawson, 2004</xref>; <xref ref-type="bibr" rid="r68">Zhang et&#x000A0;al., 2006</xref>). <xref ref-type="bibr" rid="r68">Zhang et&#x000A0;al. (2006)</xref> demonstrated that degradation of integrin was associated with more drip loss in fresh pork, while more desmin degradation was associated with less drip loss in pork loin chops, emphasizing that degradation of proteins within the muscle cell can generate different quality phenotypes than degradation of proteins at the sarcolemma. The proposed mechanism for this observation highlights that intact desmin is involved in the transfer of lateral shrinkage of myofibrils that occurs postmortem and causes water to be expelled (<xref ref-type="bibr" rid="r68">Zhang et&#x000A0;al., 2006</xref>). Therefore, degradation of desmin would aid in lessening the extent of this shrinkage, allowing for greater intracellular space to retain water.</p><p>Desmin is the most abundant intermediate filament protein in skeletal muscle. It is involved in the lateral linkage of adjacent myofibrils at the Z-disk and the connection of peripheral myofibrils to the muscle cell membrane, or sarcolemma (<xref ref-type="bibr" rid="r16">Clark et&#x000A0;al., 2002</xref>; <xref ref-type="bibr" rid="r8">Capetanaki et&#x000A0;al., 2007</xref>). Disruption in the linkages created by desmin between individual myofibrils and myofibrils to the sarcolemma is thought to prevent or limit the shrinking of the entire muscle during rigor development that could ultimately lead to drip channel formation (<xref ref-type="bibr" rid="r47">Offer and Cousins, 1992</xref>; <xref ref-type="bibr" rid="r26">Huff-Lonergan and Lonergan, 2005</xref>; <xref ref-type="bibr" rid="r51">Qian et&#x000A0;al., 2020</xref>). Additionally, disruption of these linkages has been hypothesized to allow an increase in the swelling of myofibrils with water that has entered the muscle cell from the extracellular compartment (<xref ref-type="bibr" rid="r36">Kristensen and Purslow, 2001</xref>; <xref ref-type="bibr" rid="r67">Zeng et&#x000A0;al., 2017</xref>). In the current study, it can be proposed that chops from high/normal pH loins experienced a more favorable postmortem extent of pH decline that may have enabled greater proteolysis of cytoskeletal proteins such as desmin (<xref ref-type="table" rid="tab4">Table&#x000A0;4</xref>), resulting in less drip loss and cook loss (<xref ref-type="table" rid="tab2">Table&#x000A0;2</xref>).</p></sec><sec id="sec4.3"><title>Instrumental star probe tenderness and sensory analysis</title><p>Tenderness has been regarded as the most important attribute of the consumer eating experience (<xref ref-type="bibr" rid="r48">Offer et&#x000A0;al., 1989</xref>; <xref ref-type="bibr" rid="r63">Verbeke et&#x000A0;al., 1999</xref>; <xref ref-type="bibr" rid="r64">Warner et&#x000A0;al., 2020</xref>). Understanding the intrinsic factors of postmortem muscle that contribute to tenderness development is critical for producing consistent, high-quality pork products. Consumers have previously associated pork with a higher pH with more desirable quality and sensory attributes (<xref ref-type="bibr" rid="r45">Moeller et&#x000A0;al., 2010</xref>; <xref ref-type="bibr" rid="r44">Miller, 2020</xref>). Low ultimate pH is associated with increased concentrations of lactate and H<sup>+</sup>, along with a greater amount of released free water (<xref ref-type="bibr" rid="r7">Briskey and Wismer-Pedersen, 1961</xref>; <xref ref-type="bibr" rid="r58">Sayre et&#x000A0;al., 1963</xref>). <xref ref-type="bibr" rid="r14">Choe et&#x000A0;al. (2008)</xref> found pork muscle with high glycogen and lactate to exhibit an accelerated rate of postmortem glycolysis, paler surface color, greater drip loss, and a greater extent of protein denaturation. Similar results were found by <xref ref-type="bibr" rid="r69">Zuber et&#x000A0;al. (2021)</xref>, whereby normal pH samples (pH 5.53&#x02013;5.67) were found to have less pyruvate and lactate than low pH samples (pH 5.38&#x02013;5.45) and were generally of greater quality in terms of color, tenderness (star probe), drip loss, and cooking loss. The higher sensory off-flavor scores of low/normal pH chops could be explained by a greater accumulation of lactate and H<sup>+</sup>, leading to a higher incidence of sour flavors than high/normal pH chops. The incidence of sour flavors in low/normal pH chops could potentially be attributed to a greater concentration of lactic acid. The high/normal chops had a greater percent moisture than the low/normal chops, yet no significant difference in the percent of intramuscular lipid was detected between high/normal and low/normal pH chops (<xref ref-type="table" rid="tab1">Table&#x000A0;1</xref>; <italic>P</italic>&#x02009;=&#x02009;0.36). Lipid content between pH categories was not significantly different and was unlikely to contribute to quality differences between the categories. Thus, differences observed in sensory attributes and tenderness across pH categories are likely not due to lipid content but instead a result of other factors, such as proteolysis.</p><p>Proteolysis of myofibrillar and cytoskeletal proteins is thought to be the primary contributor to the tenderization of fresh meat products, primarily driven by the calpain family of proteinases. Calpains are a class of calcium-dependent cysteine proteases (<xref ref-type="bibr" rid="r22">Goll et&#x000A0;al., 2003</xref>) whose activity is responsible for the postmortem degradation of meat proteins (<xref ref-type="bibr" rid="r35">Koohmaraie, 1994</xref>), of which desmin is a known substrate for calpain (<xref ref-type="bibr" rid="r27">Huff-Lonergan et&#x000A0;al., 1996a</xref>; <xref ref-type="bibr" rid="r28">Huff-Lonergan et&#x000A0;al., 1996b</xref>; <xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r9">Carlin et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r11">Carlson et&#x000A0;al., 2017b</xref>; <xref ref-type="bibr" rid="r67">Zeng et&#x000A0;al., 2017</xref>; <xref ref-type="bibr" rid="r3">Bhat et&#x000A0;al., 2018</xref>; <xref ref-type="bibr" rid="r51">Qian et&#x000A0;al., 2020</xref>). Lower-pH environments, especially near and below 6.0, negatively impact the activity of calpains (<xref ref-type="bibr" rid="r40">Maddock et&#x000A0;al., 2005</xref>; <xref ref-type="bibr" rid="r9">Carlin et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r41">Maddock Carlin et&#x000A0;al., 2024</xref>). <xref ref-type="bibr" rid="r40">Maddock et&#x000A0;al. (2005</xref>) and <xref ref-type="bibr" rid="r9">Carlin et&#x000A0;al. (2006)</xref> observed that calpain-1 activity was greatest at pH 6.5 when compared with pH 6.0 or 7.5, which was hypothesized to be a result of a slower autolytic inactivation in both studies. Based on the results of the current study, it is likely that high/normal pH chops maintained a cellular environment that would be more favorable for optimal calpain activity compared to low/normal pH chops, which could ultimately explain the differences in sensory and instrumental tenderness measurements in the current study. Other observations consistent with pH category differences may also provide an explanation for differences, including water-holding capacity and filament spacing, given that the high pH chops had less drip and cook loss.</p></sec><sec id="sec4.4"><title>Soluble desmin degradation products</title><p>Two distinct desmin degradation products, approximately 38- and 37- kDa, were detected within the low ionic strength soluble protein fraction in the current study (<xref ref-type="fig" rid="f2">Figure&#x000A0;2</xref>). The differential proportion in the presence of desmin degradation products between high/normal and low/normal pork chops at each aging time was significantly different (<xref ref-type="table" rid="tab4">Table&#x000A0;4</xref>). A greater proportion of samples within the high/normal pH category exhibited the presence of desmin degradation products than the low/normal pH category. The difference in proportion between these pH categories of desmin degradation products is likely attributed to differences in the activation and autolysis of calpain-1. Calpain-1 activity is influenced by the rate and extent of pH decline (<xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r1">Bee et&#x000A0;al., 2007</xref>; <xref ref-type="bibr" rid="r50">Pomponio et&#x000A0;al., 2010</xref>). The pH differences observed at 1-day postmortem would likely differentially alter calpain activity and autolysis, yet even earlier postmortem pH measurements and calpain assays would be necessary to confirm.</p><p>The low ionic strength soluble protein fraction of skeletal muscle comprises many classes of proteins. Proteins that form a fundamental part of the myofibril&#x02019;s architecture and its connection to the sarcolemma through the costamere are typically expected to be soluble in high-ionic-strength buffers; however, recent studies have consistently shown that some of these proteins, along with their degradation products, also appear in the low ionic strength soluble protein fraction (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>; <xref ref-type="bibr" rid="r61">Schulte et&#x000A0;al., 2020</xref>; <xref ref-type="bibr" rid="r69">Zuber et&#x000A0;al., 2021</xref>; <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>). This shift in protein solubility, likely due to degradation, and their differential presence and abundance according to pork quality traits strongly suggest that these products may serve as robust and efficient markers for rapidly predicting the ultimate quality of pork loin. The altered solubility of these proteins, likely degradation products, and differential presence and abundance based on pork quality traits illustrate that these products could be ideal markers to predict the ultimate pork loin quality more rapidly and consistently. For example, a degradation product like this, if present in the purge, could be used to gain insight into the extent of proteolysis of structural proteins without damaging the product. The current results suggest that the presence or absence of desmin in this fraction (given the detection method) would be useful in predicting fresh pork tenderness.</p><p>Myofibrillar and myofibrillar-associated proteins are considered to be salt-soluble, becoming soluble in solutions &#x0003E;0.3&#x000A0;M ionic strength (<xref ref-type="bibr" rid="r27">Huff-Lonergan et&#x000A0;al., 1996a</xref>; <xref ref-type="bibr" rid="r28">Huff-Lonergan et&#x000A0;al., 1996b</xref>; <xref ref-type="bibr" rid="r9">Carlin et&#x000A0;al., 2006</xref>; <xref ref-type="bibr" rid="r12">Chen et&#x000A0;al., 2017</xref>; <xref ref-type="bibr" rid="r30">Johnson et&#x000A0;al., 2023b</xref>). Thus, fully intact desmin is not expected to be found within the low ionic strength soluble protein fraction of postmortem muscle. Recent evidence supports the observation that upon proteolytic degradation of desmin, specific and unique desmin degradation products are generated, which have distinct chemical and physical properties from the intact desmin parent molecule that result in these degradation products being soluble under low ionic strength environments (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>; <xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>; <xref ref-type="bibr" rid="r31">Johnson et&#x000A0;al., 2024</xref>). More specifically, the abundance of low ionic strength soluble desmin degradation products was significantly greater in pork chops classified as more tender by instrumental star probe measurements (<xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al., 2017a</xref>). Furthermore, desmin was greater in abundance in low ionic strength soluble extracts from aged pork chops classified as lower purge loss versus higher purge loss using proteomic techniques (<xref ref-type="bibr" rid="r29">Johnson et&#x000A0;al., 2023a</xref>). Taken together, these results from different populations of pork loins support the notion that protein degradation products, namely generated through calpain proteolytic degradation, are specific products regarding their mass, solubility, and likely other chemical and physical properties.</p><p>The structure of intact desmin (55-kDa) consists of an N-terminal head, C-terminal tail, and coil-coiled central rod domain (<xref ref-type="bibr" rid="r23">Henderson et&#x000A0;al., 2017</xref>). Two monomers of desmin form dimers and arrange in a parallel formation, then form tetramers in an antiparallel orientation that ultimately comprise desmin filament (<xref ref-type="bibr" rid="r23">Henderson et&#x000A0;al., 2017</xref>; <xref ref-type="bibr" rid="r15">Claeyssen et&#x000A0;al., 2024</xref>). Through the use of proteomics, it was identified that the desmin degradation product (34-kDa) within the soluble protein fraction observed in <xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al. (2017a)</xref> corresponded to the rod domain of desmin. Considering the structure of intact desmin and findings from <xref ref-type="bibr" rid="r10">Carlson et&#x000A0;al. (2017a)</xref>, who used mass spectrometry to identify soluble peptides in aged pork loin, is it reasonable to suggest that the soluble desmin degradation products (&#x0223C;38-kDa, &#x0223C;37-kDa) in the present study also corresponded to the central rod domain of desmin, indicating that this portion became soluble following its release from the head and tail domains.</p><p>The solubility of muscle proteins can be affected by pH, temperature, and myofibrillar fragmentation, as demonstrated by <xref ref-type="bibr" rid="r66">Wismer-Pedersen, 1959</xref>; <xref ref-type="bibr" rid="r57">Sayre and Briskey, 1963</xref>; and <xref ref-type="bibr" rid="r18">Feng et&#x000A0;al., 2020</xref>. Pork, which exhibited a rapid pH decline, was shown to result in a loss of protein solubility in 0.6&#x000A0;M KCl (<xref ref-type="bibr" rid="r66">Wismer-Pedersen, 1959</xref>). The solubility of sarcoplasmic and myofibrillar proteins has also been found to be significantly reduced in pork with low pH (5.30&#x02013;5.60) at high temperatures (&#x0003C;35&#x000B0;C) at the onset of rigor (<xref ref-type="bibr" rid="r57">Sayre and Briskey, 1963</xref>); however, it is important to note that 24&#x000A0;hr pH was reported to have only a minor effect on protein solubility (<xref ref-type="bibr" rid="r57">Sayre and Briskey, 1963</xref>). <xref ref-type="bibr" rid="r42">Melody et&#x000A0;al. (2004</xref>) discovered that porcine <italic>psoas major</italic> muscle exhibited a more rapid decline in pH and also exhibited earlier degradation of intact desmin. This was thought to be so due to earlier autolysis of calpain-1, which, in turn, lowered the Ca<sup>2+</sup> required for activation (<xref ref-type="bibr" rid="r22">Goll et&#x000A0;al., 2003</xref>; <xref ref-type="bibr" rid="r38">Li et&#x000A0;al., 2004</xref>; <xref ref-type="bibr" rid="r42">Melody et&#x000A0;al., 2004</xref>). <xref ref-type="bibr" rid="r50">Pomponio et&#x000A0;al. (2010)</xref> concluded that porcine <italic>longissimus dorsi</italic> muscle experiencing a rapid decline pH (3&#x000A0;h pH&#x02009;&#x0003C;&#x02009;6.0) resulted in reduced activity and increased autolysis of calpain-1 compared to pork with an intermediate (6.0&#x02009;&#x0003C;&#x02009;3&#x000A0;h pH&#x02009;&#x0003E;&#x02009;6.30) or slow pH decline (3&#x000A0;h pH&#x02009;&#x0003E;&#x02009;6.30). <xref ref-type="bibr" rid="r39">Lomiwes et&#x000A0;al. (2014)</xref> reported that calpain-1 autolysis and activation occurred more rapidly in bovine muscle with a higher pH (&#x02265;6.2) and was delayed in muscle with a lower pH (&#x02264;5.79). In agreement with <xref ref-type="bibr" rid="r39">Lomiwes et&#x000A0;al. (2014)</xref>, <xref ref-type="bibr" rid="r40">Maddock et&#x000A0;al. (2005)</xref> and <xref ref-type="bibr" rid="r9">Carlin et&#x000A0;al. (2006)</xref> found greater activity of calpain-1 and slower autolysis at pH 6.5 in porcine muscle. Although the rate of pH decline is unknown in the present study, this measurement would have been useful for explaining the meat quality, sensory, and low ionic strength soluble desmin differences. It can be hypothesized that high/normal pH chops (5.71&#x02013;6.46) allowed for greater calpain activity, resulting in a greater proportion of high/Normal chops having desmin degradation products in the low ionic strength soluble protein fraction. Perhaps low/normal pH chops exhibited a lesser proportion of detectable desmin degradation products due to an earlier loss of calpain-1 activity in lower-pH conditions, thus diminishing the amount of proteolysis that could have occurred throughout postmortem storage.</p></sec></sec><sec id="sec5"><title>Conclusions</title><p>Fresh pork quality development continues to be a complex and multifaceted process that is not entirely understood. In this study, the variability in early postmortem pH resulted in differences in pork meat quality, including color, water-holding capacity, palatability, and tenderness. Furthermore, the pH category impacted the proteolytic activity within high/normal pH chops. Specifically, the average star probe value of high/normal pH chops was approximately 1&#x000A0;kg lower compared with low/normal pH chops on each day of aging. High/normal pH chops exhibited a greater proportion of soluble desmin degradation products on each day of aging. The degradation of desmin and the presence of the degradation products in the low ionic strength fraction is likely related to lower star probe values, lower sensory chewiness scores, and greater sensory tenderness scores. As differences in desmin degradation products were apparent at 1 d postmortem, these results inform the search for robust candidate protein markers to predict final fresh pork loin quality.</p></sec></body><back><sec id="sec6"><title>Conflict of Interest</title><p>The authors declare no real or perceived conflicts of interest.</p></sec><ack><title>Acknowledgments</title><p>The authors would like to extend thanks to Jay Stowater, Dr. Edward Steadham, and Leah Reever, as well as the staff at the Iowa State University Meats Laboratory for their assistance in pork loin fabrication and data collection. The authors also appreciate the statistical consultation provided by Dr. Juan Steibel. 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