Swine

ANEXdb: An Integrated Animal Annotation and Microarray EXpression Database

Authors: Oliver Couture (Iowa State University) , Keith Callenberg (Iowa State University) , Neeraj Koul (Iowa State University) , Sushain Pandit (Iowa State University) , Remy Younes (Iowa State University) , Zhi-Liang Hu (Iowa State University) , Jack C.M. Dekkers (Iowa State University) , James M. Reecy (Iowa State University) , Vasant G. Honavar (Iowa State University) , Christopher K. Tuggle (Iowa State University)

Abstract

All publicly available porcine expressed sequences were assembled to create longer, fuller transcripts for annotation purposes. The longer sequences were then used as queries in sequence alignment and comparison software to transfer functional annotation from their homologues in other species. In addition to transferred annotation, sequence variation was also predicted from the assembly. This information can then be used with expression data from high through-put expression measures, such as microarrays, to more fully understand the underlying mechanisms of biological processes. Both kinds of data, expression and annotation, are housed together and available at www.anexdb.org.

Keywords: ASL R2556

How to Cite: Couture, O. , Callenberg, K. , Koul, N. , Pandit, S. , Younes, R. , Hu, Z. , Dekkers, J. C. , Reecy, J. M. , Honavar, V. G. & Tuggle, C. K. (2010) “ANEXdb: An Integrated Animal Annotation and Microarray EXpression Database”, Iowa State University Animal Industry Report. 7(1). doi: https://doi.org/10.31274/ans_air-180814-946