TY - JOUR AB - <p>The impact of pedigree information and SNP location determined from either the UMD3.1 genome sequence assembly or the USDA-AIPL map on phasing accuracy were evaluated for 2 chromosomes in 2,778 parent verified Angus sire/offspring pairs. DAGPHASE (Druet and Georges, 2010), using a single generation pedigree was superior to BEAGLE software (Browning and Browning, 2007) for phasing. Results based on USDA-AIPL map are closer to expectation than those based on UMD3.1, but the difference is not significant. Recombination hotspots weredetected near 4 and 82Mb on BTA14, and near 25Mb on BTA15.</p> AU - Ziqing Weng, Dorian J. Garrick, Mahdi Saatchi, Robert Schnabel, Jeremy Taylor DA - 2013/1// DO - 10.31274/ans_air-180814-632 IS - 1 VL - 10 PB - Iowa State University Digital Press PY - 2013 TI - Impact of Pedigree Information and Genome Assembly Errors on Inference of SNP Haplotypes in Cattle T2 - Iowa State University Animal Industry Report UR - https://www.iastatedigitalpress.com/air/article/id/6462/ ER -